Data Engineer for text mining (f/m/d)

Data Engineer for text mining (f / m / d) data warehousing / database experience / FAIR principles / Text Analytics / TDM / LLMs / Python / OMICS / Biological Pathways / English

Project :

For our customer a big pharmaceutical company in Basel we are looking for a highly Data Engineer for text mining.

Background :

In Roche’s Pharmaceutical Research and Early Development organization (pRED), we make transformative medicines for patients in order to tackle some of the world’s toughest unmet healthcare needs.

At pRED, we are united by our mission to transform science into medicines. Together, we create a culture defined by curiosity, responsibility and humility, where our talented people are empowered and inspired to bring forward extraordinary life-changing innovation at speed.

This position is located in Data Products & Platforms, a chapter within the Data & Analytics function, which pushes boundaries of drug discovery and development, enabling pRED to achieve its goals.

The mission of our team is to enable pRED & Roche scientists to access and work with scientific literature content from all major content providers and drive the FAIRification and democratization of pRED large-scale disease data.

We are looking for a highly motivated Data Curator / Engineer with a focus on OMICS data to join our team.

Tasks & Responsibilities :

• Roche Text Data Repository (RoMine) data curation, and FAIRification (cleaning, parsing, disambiguation, deduplication, data harmonization etc.)
• Enhancing the user experience for RoMine (eg. building data warehouse, API)
• Contributing to the development of a Vector Store
• Establishing common terminologies to link literature and omics data and harmonization of study and biosample level metadata.
• User support for utilizing RoMine datasets
• Data integration DDA Value Stream

Must Haves :

• At least 5 years of experience in related fields
• University degree (Bachelor, Master, PhD)
• Data engineering, data warehousing and database experience
• Knowledge of the FAIR principles
• Good understanding in the area of Text Analytics, TDM and LLMs
• Experience with biological pathway and network content
• Exposure to high performance computing environments
• Python scripting
• Biomedical background / education
• Basic knowledge in scientific literature / published content / literature or / and other text based data
• Basic knowledge on OMICS data
• English fluent

Reference Nr. : 923298SDA

Role : Data Engineer for text mining

Industrie : Pharma

Workplace : Basel

Pensum : 100% (hybrid model, multiple days a month onsite required. High level of flexibility possible)

Start : ASAP (latest start date : 01.06.2024)

Duration : 6++

Deadline : 20.03.2024

If you are interested in this position, please send us your complete dossier via the link in this advertisement. If this position does not fit your profile and you wish to be considered for another position directly, you can also send us your dossier via this ad or to jobs at itcag dot com.

Contact us for more information about our company, our positions or our attractive Payroll-Only programme : +41 41 760 77 01.

About us :

ITech Consult is an ISO 9001 : 2015 certified Swiss company with offices in Germany and Ireland. ITech Consult specialises in the placement of highly qualified candidates for recruitment in the fields of IT, Life Science & Engineering.

We offer staff leasing & payroll services. For our candidates this is free of charge, also for Payroll we do not charge you any additional fees.