Talent.com
PhD position in computational pathology and image analysis
PhD position in computational pathology and image analysisCentre Hospitalier Universitaire Vaudois • Lausanne
PhD position in computational pathology and image analysis

PhD position in computational pathology and image analysis

Centre Hospitalier Universitaire Vaudois • Lausanne
Vor 9 Tagen
Stellenbeschreibung

Contexte

The Lausanne University Hospital (CHUV) is one of five Swiss university hospitals. Through its collaboration with the Faculty of Biology and Medicine of the University of Lausanne and EPFL, CHUV plays a leading role in the areas of medical care, medical research, and training.

We are inviting applications for a fully funded PhD position focused on computational pathology , with a specific emphasis on the analysis of whole-slide images (WSIs) to distinguish between multiple primary lung tumors and metastatic disease. The successful candidate will join a dynamic interdisciplinary team working at the intersection of pathology, computational science, and machine learning.

This research will contribute to improving diagnostic accuracy in thoracic oncology by developing novel image‑based computational methods to support decision‑making in challenging clinical scenarios where multiple lung lesions are present. The project will leverage digital histopathology images and associated clinical metadata to build robust, interpretable algorithms for tumor classification, comparison, and characterization.

The PhD student will be co‑mentored by faculty with expertise in pathology, machine learning, and biomedical image analysis, and will have the opportunity to contribute to high‑impact publications and translational research.

Mission

Develop image analysis algorithms to differentiate multiple primary lung tumors from intrapulmonary metastases using WSIs

  • Extract and quantify relevant histological features from tumor regions using deep learning and classical image processing
  • Design computational experiments to validate and benchmark algorithms on expert‑annotated datasets
  • Contribute to the development of interpretable tools that integrate into clinical workflows and support precision diagnostics

Key Responsibilities

WSI Preprocessing & Annotation

  • Preprocess large histopathology datasets (e.g., stain normalization, tiling, artifact removal)
  • Collaborate with pathologists for region annotation and ground‑truth labeling
  • Algorithm Development

  • Design and implement machine learning pipelines (e.g., CNNs, graph‑based models, patch‑level feature extractors) for tumor differentiation
  • Develop similarity metrics or learned embeddings for comparing tumors across slides or within patients
  • Experimental Design & Validation

  • Conduct rigorous experiments to assess diagnostic accuracy, reproducibility, and generalizability of models
  • Analyze results statistically and in collaboration with clinical experts
  • Scientific Communication

  • Contribute to the writing of scientific manuscripts, conference presentations, and progress reports
  • Participate in interdisciplinary research meetings and collaborative planning sessions
  • Tool Support & Collaboration

  • Develop modular, well‑documented code and interfaces to facilitate use by other researchers or collaborators
  • Mentor undergraduate students or junior lab members on aspects of data preparation and model development
  • Professional Growth

  • Stay current with state‑of‑the‑art literature in computational pathology, deep learning, and lung cancer diagnostics
  • Attend scientific conferences and training workshops
  • Profil

  • Master’s degree in Computer Science, Biomedical Engineering, Electrical Engineering, Applied Mathematics, or a related field
  • Strong programming proficiency in Python and experience with scientific computing libraries (e.g., NumPy, SciPy, scikit-image)
  • Experience working with digital histopathology data or other large-scale imaging datasets
  • Familiarity with deep learning frameworks (e.g., PyTorch or TensorFlow)
  • Prior work involving classification, segmentation, or similarity analysis in medical imaging or histology
  • Experience with whole slide image handling libraries (e.g., OpenSlide, SlideIO)
  • Understanding of histopathological features relevant to lung cancer (e.g., tumor architecture, cell morphology)
  • Excellent communication skills and the ability to work in a collaborative, multidisciplinary setting.
  • Nous offrons

    To become an employee of the world-famous University Hospital Center from the Canton of Vaud is an assurance of :

  • First-rate social benefits such as a Paternity Leave of 20 days and a Maternity Leave of 4 months (there is also the possibility to obtain a complementary breastfeeding leave of 1 month) ;
  • Regular salary progression adapted to your responsibilities ;
  • A right to at least three days of training per year, by accessing a wide offer of courses not only from the CHUV Training Center but also from external providers ;
  • Possibility to access one of the furnished apartments offered in the surrounding neighborhoods in case of relocation in Switzerland ;
  • Discounts proposed on social and cultural events, goodies and other services, thanks to the “H-Oxygène” association ;
  • Signing up to our Mobility Plan and benefit from different advantages (discounts on public transportation, promotion of “Mobility” car fleet and discounts on electric bikes) ;
  • Being able to enjoy our high-quality corporate restaurants, located in every hospital building, with employees’ discount.
  • Jobalert für diese Suche erstellen

    PhD position in computational pathology and image analysis • Lausanne

    Ähnliche Stellen
    R&D formulation scientist

    R&D formulation scientist

    TRB CHEMEDICA INTERNATIONAL SA • Epalinges, CH
    An innovative pharmaceutical laboratory active in pharmacy and biotechnology domains.TRB Chemedica is an international pharmaceutical company, headquartered in Switzerland, specialised in the manuf...Mehr anzeigen
    Zuletzt aktualisiert: vor 15 Tagen • Gesponsert
    Forschungsingenieur - NLP und große Sprachmodelle

    Forschungsingenieur - NLP und große Sprachmodelle

    EPFL • Lausanne, Switzerland
    EPFL, die Schweizerische Bundesanstalt für Technologie in Lausanne, ist einer der dynamischsten Universitätskampusse in Europa und gehört zu den Top 20 Universitäten weltweit.Die EPFL beschäftigt m...Mehr anzeigen
    Zuletzt aktualisiert: vor 8 Tagen • Gesponsert
    Process Engineer Integrated Photonics (ID : 2619)

    Process Engineer Integrated Photonics (ID : 2619)

    Ligentec SA • Lausanne, Vaud, Switzerland
    Quick Apply
    At LIGENTEC, we aren’t just following the roadmap of the Industrial Revolution 4.Based in the vibrant EPFL Innovation Park, we specialize in ultra-low loss Photonic Integrated Circuits (PICs) that ...Mehr anzeigen
    Zuletzt aktualisiert: vor 26 Tagen
    Informaticien de gestion / support H / F

    Informaticien de gestion / support H / F

    Flexsis • La Chaux-de-Fonds, Neuchâtel
    Traduction des besoins internes en approche informatique.Participation active à la numérisation des processus de la société. Modification et création des procédures en PL / SQL.Traitement et exportati...Mehr anzeigen
    Zuletzt aktualisiert: vor 3 Tagen • Gesponsert
    Ingénieur - Conception mouvements H / F

    Ingénieur - Conception mouvements H / F

    Flexsis • Le Locle, Neuchâtel
    Concevoir et développer des mécanismes horlogers fiables et performants.Comprendre et intégrer les contraintes de fabrication et d'assemblage permettant la maîtrise des processus d'une production i...Mehr anzeigen
    Zuletzt aktualisiert: vor 3 Tagen • Gesponsert
    Senior Security Engineer for AI Drug Discovery Platform

    Senior Security Engineer for AI Drug Discovery Platform

    WhatJobs • Lausanne, Waadt, Schweiz
    A leading AI healthcare company in Lausanne is seeking a Senior Security Engineer to manage the security of their ML-based platform and HPC infrastructure. The successful candidate will participate ...Mehr anzeigen
    Zuletzt aktualisiert: vor 5 Tagen • Gesponsert
    Space-Grade Hardware Engineer : Analog & Mixed-Signal Design

    Space-Grade Hardware Engineer : Analog & Mixed-Signal Design

    WhatJobs • Vaud, Schweiz
    A leading technology firm in Switzerland is seeking an experienced Hardware Engineer to develop advanced communication systems. This role includes full ownership of the electronic board development ...Mehr anzeigen
    Zuletzt aktualisiert: vor 1 Tag • Gesponsert
    Photonic Design and Optimisation Engineer (ID : 2604)

    Photonic Design and Optimisation Engineer (ID : 2604)

    Ligentec SA • Lausanne, Vaud, Switzerland
    Quick Apply
    LIGENTEC is a young, dynamic and strongly growing company, headquartered in Lausanne, Switzerland, near EPFL, close to the shore of Lake Geneva. We are developing Photonic Integrated Circuits (PICs)...Mehr anzeigen
    Zuletzt aktualisiert: vor über 30 Tagen
    Ingénieur en Automation

    Ingénieur en Automation

    Albedis • Neuchâtel, Neuchâtel / Jura
    Développement des solutions d'automation pour l'industrie (pharmaceutique, alimentaire.Etude du besoin du client, conception du système, validation du concept. Programmation des automates et des sy...Mehr anzeigen
    Zuletzt aktualisiert: vor über 30 Tagen • Gesponsert
    R & D FORMULATION SCIENTIST

    R & D FORMULATION SCIENTIST

    TRB CHEMEDICA INTERNATIONAL SA • 1066 Epalinges, CH
    R & D FORMULATION SCIENTIST (12-month temporary mission)An innovative pharmaceutical laboratory active in pharmacy and biotechnology domainsreinforces its team and is hiring aR & D FORMULATION SCIE...Mehr anzeigen
    Zuletzt aktualisiert: vor 7 Tagen • Gesponsert
    Pre-Doctoral Researcher, Public Economics & Policy

    Pre-Doctoral Researcher, Public Economics & Policy

    WhatJobs • Lausanne, Waadt, Schweiz
    A premier research institution in Lausanne is inviting applications for a full-time Pre-Doctoral Researcher position in Public Economics. This role includes data management, statistical analysis, an...Mehr anzeigen
    Zuletzt aktualisiert: vor 1 Tag • Gesponsert
    Cadranographe (H / F)

    Cadranographe (H / F)

    Flexsis • La Chaux-de-Fonds, Neuchâtel
    Vous exécutez les opérations en respectant les priorités, les consignes, la qualité et les méthodes à utiliser.Vous annoncez les anomalies ou problèmes rencontrés. Vous êtes dotée d'une excellente d...Mehr anzeigen
    Zuletzt aktualisiert: vor 3 Tagen • Gesponsert
    AI Engineer

    AI Engineer

    Frontiers Media • Lausanne, VD, CH
    Quick Apply
    At Frontiers, our purpose is simple and ambitious : to make all science open.We believe open research empowers the global scientific community to accelerate discovery and develop the solutions neede...Mehr anzeigen
    Zuletzt aktualisiert: vor 11 Tagen
    Senior Security Engineer

    Senior Security Engineer

    WhatJobs • Lausanne, Waadt, Schweiz
    Isomorphic Labs is applying frontier AI to help unlock deeper scientific insights, faster breakthroughs, and life-changing medicines with an ambition to solve all disease.A future enabled and enric...Mehr anzeigen
    Zuletzt aktualisiert: vor 5 Tagen • Gesponsert
    Ingénieur Intégration – Data

    Ingénieur Intégration – Data

    Integraal Data Services • Lausanne, CH
    Ingénieur Intégration – DataLe département Transformation Digitale et Systèmes d’Information (TDSI) mène plusieurs initiatives stratégiques visant à améliorer la performance et l’efficacité de l’en...Mehr anzeigen
    Zuletzt aktualisiert: vor 11 Tagen • Gesponsert
    Métrologue 50 à 100% H / F

    Métrologue 50 à 100% H / F

    Flexsis • La Chaux-de-Fonds, Neuchâtel
    Réaliser les contrôles dimensionnels et métrologiques selon les procédures définies.Assurer la calibration, la vérification et l'étalonnage des instruments de mesure. Rédiger les rapports de contrôl...Mehr anzeigen
    Zuletzt aktualisiert: vor 3 Tagen • Gesponsert
    Analog & Mixed-Signal Hardware Engineer, Satellite Systems

    Analog & Mixed-Signal Hardware Engineer, Satellite Systems

    WhatJobs • Lausanne, Waadt, Schweiz
    A leading technology company in Lausanne is seeking an Electronic Hardware Engineer to join their R&D team.This role involves designing and developing reliable analog and mixed-signal electronics f...Mehr anzeigen
    Zuletzt aktualisiert: vor 1 Tag • Gesponsert
    Programmeur régleur FAO AlphaCAM

    Programmeur régleur FAO AlphaCAM

    Randstad (Schweiz) AG • La Chaux-de-Fonds
    Mandaté par un de nos clients actifs dans le monde de l'horlogerie et à taille humaine.Programmeur régleur FAO sur AlphaCAM . Autonome, vous élaborez et améliorez les stratégies et gammes d'usinage ...Mehr anzeigen
    Zuletzt aktualisiert: vor über 30 Tagen • Gesponsert